Omics · study · 2026
Pre-existing chromatin states regulate KLF4 binding to eliminate leukemic cells (ATAC-Seq)
Listed in NCBI GEO
Transcription factors collaborate with chromatin's epigenetic states to regulate cell fate decisions.
Description
While recent work suggested that histone modifications could regulate the activity of pioneer transcription factors in vitro, it was unclear whether these findings applied in vivo, or if chromatin states could influence transcription factor binding to affect cell fate. In this work, we identified that H3K18ac, a potential caner-related histone mark, could regulate Klf4's genomic binding, thereby affecting divergent cellular destinies in leukemia cells and HSPCs.
This unveils prospective opportunities for applying transcription factors combined with epigenetic markers in clinical applications. In summary, our results suggest that pre-existing chromatin states could regulate transcription factor binding in vivo, and therefore influence the cell fate decision.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE260nnn/GSE260724 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260724 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1082788 ncbi.nlm.nih.gov/bioproject/PRJNA1082788 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE260724 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |