Data · study · 2026
The evolution of the type I IFN transcriptional response across metazoans [PRO-seq]
Listed in NCBI GEO
Host-pathogen dynamics have been observed to entail rapid evolution of genes involved in the host innate immune system.
Description
Type I interferon cytokines trigger an antiviral cellular state by binding to receptors that transduce a signaling response to induce the transcription of hundreds of interferon-stimulated genes. However, it remains poorly understood how gene transcription regulation has been rewired through evolutionary time to achieve species-specific changes in the interferon-controlled transcriptional response.
We generated nascent transcription (PRO-seq) and steady-state mRNA expression (RNA-seq) datasets from 6 species to investigate differences in the transcriptional response triggered by type I interferon across animals.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE217nnn/GSE217400 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE217400 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA898807 ncbi.nlm.nih.gov/bioproject/PRJNA898807 ↗
project · from NCBI GEO
Topics
- Stated by source
- Gallus gallus · Homo sapiens · Macaca mulatta · Other
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE217400 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9031 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| concepts[organism].NCBITaxon:9544 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |