Omics · study · 2026
A Novel Precision-cut lung slice stretch model using removable inflation materials [bulk RNA-seq]
Listed in NCBI GEO
Mechanical stretch is an important biomechanical stimulus that facilitates tissue development in the respiratory system by programming the epithelium, endothelium, mesenchyme, and immune cells.
Description
Lung tissue undergoes stretch-induced differentiation under normal prenatal and postnatal development, and supraphysiological or aberrant stretch responses are known mechanisms of acute lung injury and extracellular matrix (ECM) disruption.
Existing in vitro and ex vivo cyclic mechanical stretch (CMS) models have well-recognized disadvantages, and agarose-inflated precision-cut lung slice (PCLS) models are hindered by retention of agarose in the tissue and by damaging methods of anchoring slices for stretch. Here we present a PCLS system that uses a removable agarose inflation medium and a supportive poly(ethylene glycol) (PEG) hydrogel for embedding, enabling application of CMS to PCLS.
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Bulk RNA-seq of PCLS after 24 h of cyclic stretch versus static culture, from neonatal mice exposed to room air or hyperoxia, is used to demonstrate activation of mechanotransduction pathways and validate the model transcriptomically.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE345nnn/GSE345215 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE345215 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1519172 ncbi.nlm.nih.gov/bioproject/PRJNA1519172 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE345215 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |