Omics · study · 2026
ATAC-seq of the granulopoiesis lineage from different organs
Listed in NCBI GEO
We performed ATAC-seq of 7,000-50,000 ex-vivo flow-sorted cells from the granulopoietic tree in mice.
Description
For this we sorted Granulocyte-Macrophage Progenitors (GMP) from bone marrow (BM) and spleen (SP), Pre-Neutrophils (PreN) from BM and SP as well as Immature Neutrophils (imNeu) and Mature neutrophils (Neutro) from BM, SP and Blood (Bld). After sorting, cells were immediately processed using the OmniATAC protocol (Corces, Nat Methods 2014) and sequenced on a Novaseq-6000.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE318nnn/GSE318435 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE318435 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1418729 ncbi.nlm.nih.gov/bioproject/PRJNA1418729 ↗
project · from NCBI GEO
- PubMed 41996475 pubmed.ncbi.nlm.nih.gov/41996475 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE318435 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |