Omics · study · 2026
Molecular signatures of T cells targeting multiple myeloma
Listed in NCBI GEO
Immunotherapeutic approaches including cell therapy are believed to be the next generation of paradigm-changing treatment options in hematological malignancies.
Description
Cell therapy using CAR-T cells or expanded autologous T cells (TILs) has shown promising results in non-solid and solid malignancies. However, acquired resistance to immunotherapy or rapid disease progression represent major clinical challenges in hematological cancers.
Transgenic T cell receptors (TCRs) redirect patient-autologous lymphocytes to tumor antigens and can induce regression of refractory solid tumors. However, a bone fide population of myeloma reactive TCRs has yet to be identified. Here, we have established a multiplexed optical barcoding assay that allows for ex vivo profiling of single bone marrow-resident T cells in order to identify sequences and transcriptional signatures of patient-individual tumor-reactive lymphocytes.
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By integrating antigen specificity and the transcriptional profile of single myeloma-associated T cells using the CDR3 sequence as clone-specific barcode, we found that tumor-reactivity results in a specific gene expression state of bone marrow-resident CD8+ T cells. Non-tumor-reactive clones were either CD4+ or enriched for viral specificities, while myeloma reactive TCRs demonstrated an increased clonality within the overall lymphocyte repertoire.
We furthermore describe a subset of CD29 (ITGB1)-expressing effector-memory CD8+ T cells that is associated with response to induction immunochemotherapy. Our results demonstrate antitumor reactivity in a subset of bone marrow-resident T cells against malignant plasma cells and provide the rationale for future personalized TCR-transgenic cell therapy approaches in newly diagnosed multiple myeloma patients. More broadly, the generated resources from this project might contribute to identifying and monitoring tumor reactive T cell responses targeting hematological neoplasias.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE242nnn/GSE242883 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242883 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1015223 ncbi.nlm.nih.gov/bioproject/PRJNA1015223 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens · Other
- From keywords
- Life Sciences
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE242883 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |