Omics · study · 2026
Single-cell transcriptomic analysis of lipoprotein transport in yolk sac membrane endodermal epithelial cells of chicken embryos
Listed in NCBI GEO
This study investigates the transcriptional landscape of yolk sac membrane (YSM) endodermal epithelial cells in chicken embryos using single-cell RNA sequencing.
Description
The yolk sac membrane plays a critical role in nutrient absorption and transport, particularly in lipoprotein metabolism during early embryonic development. Single-cell RNA sequencing was performed on YSM samples collected at embryonic day 4 (E4) and embryonic day 7 (E7).
After quality control filtering, high-quality cells were retained for downstream analysis. Clustering analysis identified distinct cellular populations, and gene expression profiles were analyzed to characterize functional differences across developmental stages. The processed data include filtered gene expression matrices, cell barcode annotations, gene feature annotations, and cell-level metadata including clustering assignments.
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Raw sequencing data are available in the Sequence Read Archive (SRA).
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE329nnn/GSE329577 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329577 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1451834 ncbi.nlm.nih.gov/bioproject/PRJNA1451834 ↗
project · from NCBI GEO
- PubMed 42102753 pubmed.ncbi.nlm.nih.gov/42102753 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Gallus gallus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE329577 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9031 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |