Omics · study · 2026
Chromatin accessibility profiling of high endothelial cells (HECs) from mouse peripheral lymph node and Peyer's patch by ATAC-seq
Listed in NCBI GEO
High endothelial venules (HEVs) are specialized blood vessels that mediate lymphocyte entry into secondary lymphoid organs.
Description
We performed ATAC-seq on high endothelial cells (HECs) isolated by flow cytometry from mouse peripheral lymph nodes (PLNs, identified by PNAd expression using the MECA-79 antibody) and Peyer's patches (PPs, identified by MAdCAM-1 expression using the MECA-367 antibody) to characterize genome-wide chromatin accessibility and identify HEC-specific cis-regulatory elements.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE342nnn/GSE342565 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342565 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1508208 ncbi.nlm.nih.gov/bioproject/PRJNA1508208 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE342565 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |