Omics · study · 2026
CDK7 inhibition suppresses Hippo-YAP signaling to reverse CDK4/6 inhibitor resistance in hormone receptor-positive breast cancer [ChIP-seq]
Listed in NCBI GEO
Hormone receptor-positive (HR+) breast cancer is the most prevalent breast cancer subtype, and cyclin-dependent kinase 4/6 inhibitors (CDK4/6i) are the mainstay of treatment for metastatic disease.
Description
Amplification or overexpression of CDK6 is an established driver of CDK4/6i resistance, for which no targeted strategy exists. Through a kinase-inhibitor screen for compounds that suppress CDK6, we identified PIK-75 as an agent that downregulates CDK6 and reverses CDK4/6i resistance in HR+ breast cancer.
We found that PIK-75 acts as an inhibitor of CDK7, abolishing phosphorylation of serine 5 on the RNA polymerase II (Pol II) carboxy-terminal domain. The structurally distinct CDK7 inhibitor THZ1 and shRNA-mediated CDK7 depletion both phenocopied the suppression of yes-associated protein (YAP) and CDK6, establishing the effect as CDK7-dependent. Chromatin immunoprecipitation demonstrated that CDK7 inhibition reduced Pol II-serine 5 occupancy at the YAP1 promoter, downregulating YAP1 transcription and YAP-TEAD output.
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Genome-wide, PIK-75 induced promoter-proximal Pol II pausing that was more pronounced at oncogenic-pathway genes, and transcriptomic and proteomic profiling confirmed a bona fide CDK7-inhibition signature, accompanied by widespread intron retention, rather than a phosphoinositide 3-kinase-dominated response. In CDK6-overexpressing xenografts, PIK-75 combined with abemaciclib reversed resistance and suppressed YAP and CDK6 in vivo.
These findings define a transcriptional axis linking CDK7 and Pol II-serine 5 phosphorylation to Hippo-YAP signaling and CDK6, and establish CDK7 inhibition as a rational strategy for CDK4/6i-resistant HR+ breast cancer, supporting evaluation of clinical-stage CDK7 inhibitors in combination with continued CDK4/6 inhibition.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE335nnn/GSE335518 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335518 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1435545 ncbi.nlm.nih.gov/bioproject/PRJNA1435545 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE335518 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |