Data · dataset · 2021
The Mouse Action Recognition System (MARS): pose annotation data
Listed in CaltechDATA
The study of naturalistic social behavior requires quantification of animals' interactions.
Description
This is generally done through manual annotation—a highly time consuming and tedious process. Recent advances in computer vision enable tracking the pose (posture) of freely-behaving animals.
However, automatically and accurately classifying complex social behaviors remains technically challenging. We recently introduced the Mouse Action Recognition System (MARS), an automated pipeline for pose estimation and behavior quantification in pairs of freely interacting mice (Segalin et al, 2020). This Dataset includes the training, test, and validation sets used to train MARS's supervised classifiers for three social behaviors of interest: close investigation, mounting, and attack.
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Included in the dataset are 15000 pairs of top- and front-view frames from videos of pairs of interacting mice. Each frame has been manually annotated by five individuals for a total of nine (top-view) or thirteen (front-view) keypoints: the nose, ears, base of neck, hips, base of tail, middle of tail, and end of tail, and additionally the four paws (front-view only.)
Links
Where it is published
- CaltechDATA record data.caltech.edu/records/j1ww1-mdc55 ↗
landing page · from data caltech edu
- DOI doi.org/10.22002/d1.2011 ↗
DOI / persistent id · from data caltech edu
Catalogue records · 1
- InvenioRDM API data.caltech.edu/api/records/j1ww1-mdc55 ↗
metadata API · from data caltech edu
Topics
- Stated by source
- ethology · mouse · pose estimation · social behavior
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Mus musculus · Psychology & Behavioral Science · Social Science
- Inferred from text
- Zoology 71%
Provenance · 1 source records, 19 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| CaltechDATA | j1ww1-mdc55 | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].anzsrc:group:3109 | enrichment · data caltech edu | taxonomy-embedding@1.0.0 | title+keywords+description (71%) |
| concepts[field].local:field:earth-environmental | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:engineering | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:humanities | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:social-science | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[organism].NCBITaxon:10090 | mapping · data caltech edu | vocabulary-mapper@1.0.0 | keywords['mouse'] |
| concepts[topic].invenio_subject:data_caltech_edu:ethology | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:mouse | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:pose-estimation | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:social-behavior | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| description | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/description |
| license | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| publication_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| title | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/title |
| updated_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| version_label | source · data caltech edu | connector:data_caltech_edu@1.0.0 |