Omics · study · 2026
Frequency and prognostic significance of genetic abnormalities in a subgroup of intermediate risk neuroblastoma patients: A SIOPEN study
Listed in NCBI GEO
Description
PURPOSE: Intermediate-risk neuroblastoma patients >18 months of age, with non-MYCN amplified, International Neuroblastoma Risk Group Staging System (INRGSS) localised, unresectable or International Neuroblastoma Staging System (INSS) stage 3 tumors, and unfavourable histology have inferior outcomes compared to other intermediate-risk patients. This study aimed to identify genetic prognostic biomarkers within this rare subgroup.
PATIENTS AND METHODS: We conducted a large, international study including chromosomal copy number in all cases, next-generation DNA sequencing in most, and telomere maintenance mechanisms (TMM) and gene expression in a subset, and correlated results with patient survival. RESULTS: Among 98 tumors, 9/98 (9.2%) had oncogene amplifications (CDK4/MDM2/TERT co-amplification (n=1), CDK4/MDM2 co-amplification (n=4), CDK4 (n=2), TERT (n=1), and MYC (n=1)), while 63/98 (64.3%) had typical segmental chromosomal aberrations (tSCAs).
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Patients with tumors with oncogene amplification had the worst 5-year event-free survival (EFS) [0%] (p<0.0001 log rank test) and 5-year overall survival (OS) [44.4% (95% CI: 21.4-92.3%)] (p <0.01 log rank test). Patients with tumors harbouring tSCAs had inferior EFS compared to those with numerical chromosomal aberrations only [51.7% (95% CI: 40.6-65.8%) vs. 93.3% (95% CI: 81.5-100%)] (p <0.01). Patients with p53 pathway tumor alterations (n=10) had worse EFS than those without [0% vs. 61.1% (95% CI: 50.3-74.3%)] (p <0.0001, log-rank test) and worse OS [26.7% (95% CI: 8.9-80.3%) vs. 80.9% (95% CI: 71.8-91.3%)] (p<0.001 log rank test).
Multi-variable analysis identified tSCAs as an independent prognostic variable for EFS and oncogene amplification or p53 pathway abnormalities as independent prognostic variables for EFS and OS. CONCLUSION: Oncogene amplification and/or p53 pathway abnormalities and/or typical SCAs identify patients with intermediate-risk neuroblastoma with inferior outcome for whom intensified or alternative treatments should be considered.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE327nnn/GSE327331 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327331 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1450528 ncbi.nlm.nih.gov/bioproject/PRJNA1450528 ↗
project · from NCBI GEO
- PubMed 42385103 pubmed.ncbi.nlm.nih.gov/42385103 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 65% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE327331 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |