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Omics · study · 2026

RNA-seq for iPSC-derived macrophages with/without Lipopolysaccharide (LPS) stimulation.

Listed in NCBI GEO

Wiskott-Aldrich syndrome (WAS) is an immunodeficiency disorder caused by the dysfunction of the Wiskott-Aldrich syndrome protein (WASP).

Description

Although the effect of WASP on actin -polymerization is well studied, less is known about its role in other intracellular systems. Here we show that WASP interacts with the nucleolus in macrophages.

Using induced pluripotent stem cells and the CRISPR-Cas system, we show that knocking out WASP results in reduced nucleolar size, loss of roundness, decreased sub-nucleolar structure percentage, and impaired ribosomal RNA transcription. Furthermore, we identified interactions between WASP and two nucleolar proteins, including nucleophosmin 1 (NPM1) and fibrillarin (FBL). Previous research has demonstrated that a loss of NPM1 results in heightened cytokine expression following lipopolysaccharide (LPS) stimulation.

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We found that WASP-deficient cells presented less NPM1 and more cytokine expression in response to LPS stimulation, providing new insights on the role of the nucleolus in immune functions. Together, our study provides new information on WASP in nucleolar function and its control of inflammatory cytokine expression in response to inflammatory stimuli.

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Life Sciences
Inferred from text
RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE23748913 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (65%)
concepts[organism].NCBITaxon:9606source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title