Omics · study · 2026
Accessible chromatin profile of early life and adult origin B cell populations
Listed in NCBI GEO
The adult B cell pool is a developmental mosaic comprising cells of early life (ELO) and adult origin.
Description
To further understdand the differences between B cells of each origin we used a genetic time stamping approach to lable ELO B cells and FACS isolate from the spleen naive follicular and marginal zone B cells, B1 B cells from the peritoneal cavity, and memory B cells (MBC) from the peyer's patch. The assay for transposase accessible chromatin sequencing (ATAC-seq) was performed on each population to identify epigenetic programming that corresponded to ELO versus adult derived B cells.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE309nnn/GSE309960 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE309960 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1364052 ncbi.nlm.nih.gov/bioproject/PRJNA1364052 ↗
project · from NCBI GEO
- PubMed 41894393 pubmed.ncbi.nlm.nih.gov/41894393 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE309960 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |