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Table · dataset · 2026

Plastid genomes and 45S nuclear rDNA cistrons of six <i>Polyscias </i>species assembled from publicly available SRA data

Listed in figshare and Loughborough Research Repository — shown once because both records carry DOI 10.6084/m9.figshare.33979093.v1

Description

<pre><pre>Twelve annotated nucleotide assemblies for six Polyscias (Araliaceae) species: six complete plastid (chloroplast) genomes (~156 kb each) and six complete 45S nuclear ribosomal DNA cistrons (18S-ITS1-5.8S-ITS2-26S; ~5.8 kb each).<br><br>Every sequence was assembled by the authors from third-party, publicly available SRA reads that were generated by other groups; the source SRA run for each sequence is given in the FASTA header and in sample_metadata.tsv.

Because the underlying reads were not generated by the authors, these derived assemblies are eligible for INSDC deposition only as Third Party Assembly (TPA:assembly) records and INSDC accessions may not be available for them; they are archived here so the results remain openly available, citable and reproducible.<br><br>Files: FASTA sequences; NCBI 5-column feature tables (.tbl) and GenBank flatfiles (.gbf) with full annotation; per-sequence metadata (sample_metadata.tsv); README.<br><br>Assembly programs: plastid genomes - dnaLCW v4.21 (Illumina) and GetOrganelle v1.7.7.1 (PacBio HiFi); 45S nrDNA - dnaLCW v4.21 (Illumina) and hifiasm v0.25.0 (PacBio HiFi).

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The 18S, 5.8S and 26S boundaries of the 45S cistrons were located with Infernal cmscan against the Rfam covariance models SSU_rRNA_eukarya, 5_8S_rRNA and LSU_rRNA_eukarya.<br><br>Primary read data (INSDC Sequence Read Archive): SRR19607894, SRR19607893, SRR19607909, SRR28058088, SRR28058077, SRR28058093.</pre></pre><p></p>

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Catalogue records · 1

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Provenance · 2 source records, 34 field assertions
SourceKeyLast seenRaw
figshareoai:figshare.com:article/339790935 d agoJSON v1
Loughborough Research Repositoryoai:figshare.com:article/339790935 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · figshare comconnector:figshare_com@1.0.0
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concepts[field].anzsrc:field:310410mapping · figshare comvocabulary-mapper@1.0.0keywords['Phylogeny and comparative analysis']
concepts[field].anzsrc:field:310509mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Genomics']
concepts[field].anzsrc:field:310509mapping · figshare comvocabulary-mapper@1.0.0keywords['Genomics']
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concepts[field].local:field:computer-science-aimapping · figshare comconnector:figshare_com@1.0.0
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concepts[field].local:field:economics-financemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
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concepts[field].local:field:engineeringmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
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concepts[field].local:field:life-sciencesmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:life-sciencesmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:materials-sciencemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · figshare comconnector:figshare_com@1.0.0
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concepts[field].local:field:ocean-atmosphericmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:physicsmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
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concepts[field].local:field:psychology-behavioralmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:social-sciencemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
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