Omics · study · 2026
CD84 Determines Differential Fates of Pro-fibrotic Macrophages [scRNA-seq]
Listed in NCBI GEO
Fibrotic interstitial lung diseases (fILDs) are characterized by macrophage heterogeneity and the expansion of SPP1hi pro-fibrotic macrophages.
Description
We performed single-cell RNA sequencing (scRNA-seq) of whole-lung tissues from bleomycin-treated control mice and mice with monocyte-specific Cd84 deletion to investigate how CD84 regulates myeloid cell recruitment, differentiation, and function during pulmonary fibrosis. scRNA-seq identified distinct monocyte and macrophage populations.
CD84 was preferentially expressed in Spp1hi pro-fibrotic macrophages, and its expression progressively increased along the monocyte-to-pro-fibrotic macrophage differentiation trajectory. Cd84 deletion reduced the recruitment of monocyte-derived macrophages, inhibited their differentiation into Spp1hi macrophages, and shifted macrophage composition toward Il1rnhi macrophages associated with alveolar epithelial regeneration.
Read the rest (1 more)
These findings identify CD84 as a key regulator of macrophage fate and a potential therapeutic target for pulmonary fibrosis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE344nnn/GSE344929 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE344929 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1517983 ncbi.nlm.nih.gov/bioproject/PRJNA1517983 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE344929 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |