Omics · study · 2026
Toward a more precise immunophenotypic and molecular definition of human cMoPs
Listed in NCBI GEO
Monocytes arise from haematopoietic progenitors in the bone marrow and play crucial roles in both homeostasis and inflammation.
Description
Human common monocyte progenitors (cMoPs) were originally identified as CLEC12A⁺CD64hi cells but have recently been redefined as CD115⁺CD64hi/int cells. We therefore evaluated whether CLEC12A⁺CD64hi cMoPs and CD115⁺CD64hi/int cMoPs represent the same cell type using flow cytometry, scRNA-seq, morphological, and functional analyses.
We demonstrate that including CD115 in the gating strategy, rather than CLEC12A, yields a more accurate definition of cMoPs. Differentiation assays demonstrate the transition of CD115⁺CD64int cMoPs into CD115⁺CD64hi cMoPs and a comparable capacity for the two cMoPs to generate monocyte progeny. scRNA-seq clustering of the CD115⁺CD64hi/int cMoPs identified five different transcriptional features, including maturation-associated programs, IFN response and stress-related genes.
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ATAC-seq analysis of CD115⁺CD64hi/int cMoPs identified IRF8, PU.1, and also C/EBPδ as transcription factors putatively involved in monocyte development. Based on a more accurate definition and analysis, our data demonstrates the molecular complexity of human cMoPs.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE303nnn/GSE303727 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE303727 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1297163 ncbi.nlm.nih.gov/bioproject/PRJNA1297163 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Single-cell RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE303727 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |