Data · dataset · 2026
The production, cargo of extracellular vesicles in Dickeya dadantii 3937 and Pectobacterium brasiliense 1692
Listed in ZivaHub
<p dir="ltr">Soft Rot Pectobacteriaceae (SRP), comprising the genera Dickeya and Pectobacterium, are Gram-negative plant pathogens responsible for economically significant diseases such as soft rot and blackleg in potatoes.
Description
In South Africa, Pectobacterium brasiliense is the primary causal agent, while in parts of Europe, including France, Dickeya dadantii<i> </i>is particularly impactful. With no effective chemical control strategies currently available, a deeper understanding of their biology is essential for developing improved disease management approaches.
This dissertation investigates the production and cargo of extracellular vesicles (EVs) in D. dadantii 3937 and P. brasiliense<i> </i>1692. EVs are membrane-bound structures involved in bacterial communication and virulence. A comprehensive literature review contextualises EV research in plant pathogenic bacteria, drawing insights from studies on human and animal pathogens to explore EV biogenesis, cargo, and plant interactions.
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Experimental analyses demonstrated that both species produce EVs with single and double membrane structures, consistent with outer membrane vesicles (OMVs) and outer–inner membrane vesicles (OIMVs). EV production increased during the stationary phase, and chemical stress altered vesicle yield and protein composition, particularly under ethanol and EDTA treatment. Molecular analyses confirmed that EVs carry DNA, RNA, and pectate lyases.
Vesicle-associated nucleic acids included low-molecular-weight DNA and short RNAs, suggesting selective packaging and potential functional significance. Sequencing of DNA and RNA of EVs from P. brasiliense<i> </i>revealed that over half of its genes are represented within vesicular DNA, enriched in biosynthetic and catalytic functions. Distinct differences between externally associated and luminal RNA cargo were identified.
As such, this work deepens our understanding of vesicle biology in SRP by characterising their production, structural features, and nucleic acid cargo composition.</p>
Links
Where it is published
- DOI doi.org/10.25403/upresearchdata.31316029.v1 ↗
DOI / persistent id · from zivahub uct ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from zivahub uct ac za
Topics
- From keywords
- Bacteriology · Biological adaptation · Cell metabolism · Chemistry · Earth & Environmental Science · Genomics and transcriptomics · Life Sciences · Medicine & Health
- Inferred from text
- Disease 75% · Sequencing 75%
Provenance · 1 source records, 15 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ZivaHub | oai:figshare.com:article/31316029 | 6 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · zivahub uct ac za | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:field:310103 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Cell metabolism'] |
| concepts[field].anzsrc:field:310204 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310403 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Biological adaptation'] |
| concepts[field].anzsrc:field:310701 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Bacteriology'] |
| concepts[field].local:field:chemistry | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[modality].local:modality:sequencing | enrichment · zivahub uct ac za | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/description |
| license | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/rights |
| publication_date | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| title | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/title |