Table · dataset · 2026
Minimal data set for PONE-D-26-35226: passenger co-deletion and glutaminolysis signatures across fourteen cancer types
Listed in figshare
Description
<p dir="ltr">Tumour-level derived variables underlying the manuscript "Passenger co-deletion confounds glutaminolysis signatures anchored on PTEN loss: a cautionary case for location-aware signature design" (PLOS ONE, PONE-D-26-35226).</p><p dir="ltr">One row per tumour for 6,186 tumours across fourteen TCGA PanCancer Atlas cohorts, carrying PTEN copy-number tier and ordinal severity, PTEN mutation class, per-gene expression z-scores and the glutaminolysis signature score, copy number for the signature genes and 10q23-q24 interval neighbours, consensus tumour purity, per-sample aneuploidy score, microsatellite instability score, tumour mutational burden, ERG expression, a proliferation index, and overall survival.
Includes a data dictionary, the list of seventeen studies assessed but excluded with their tier counts, and SHA-256 checksums.</p><p dir="ltr">No new data were generated. Derived from TCGA PanCancer Atlas expression, copy-number, mutation and clinical data obtained through the cBioPortal datahub, and from the TCGA PanCanAtlas ABSOLUTE consensus purity tables. Primary data are third-party and remain publicly available from those sources.
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The complete analysis code is archived separately at Zenodo (DOI: 10.5281/zenodo.21195209).</p><p dir="ltr">Two variables used in the manuscript are not reproduced here and are read directly from the primary sources by the analysis code: pathological T stage, available in the cBioPortal clinical patient table as PATH_T_STAGE, and copy number for the full set of 44 chromosome 10q23-q24 genes used in the interval analysis, available in the cBioPortal copy-number file.</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.33716476.v1 ↗
DOI / persistent id · from figshare com
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from figshare com
Topics
Provenance · 1 source records, 20 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| figshare | oai:figshare.com:article/33716476 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · figshare com | connector:figshare_com@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:field:321101 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Cancer cell biology'] |
| concepts[field].anzsrc:field:321111 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Solid tumours'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/description |
| license | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/rights |
| publication_date | source · figshare com | connector:figshare_com@1.0.0 | |
| title | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/title |