Omics · study · 2026
Molecular profiling of autocrine-acting and angiocrine-acting vascular Wnt signalling in the liver.
Listed in NCBI GEO
The spatial division of labour in the liver is established through a polarized gradually changing gene programme ranging from the portal tract to the central vein.
Description
Recent advances in single-cell technology revealed that every major hepatic cell type can be characterized by such zonated gene expression gradients. In this regard, the endothelium was identified as a crucial instructor of hepatic zonation by fuelling the hepatocytes with Wnt ligands and potentiators in an angiocrine manner.
To further dissect the role of vascular Wnt factors in shaping liver homeostasis, we employed single-cell RNA sequencing on FACS-sorted hepatocytes and liver sinusoidal endothelial cells (LSEC) from Wnt-deficient mice and their littermate control.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE230nnn/GSE230663 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE230663 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA962086 ncbi.nlm.nih.gov/bioproject/PRJNA962086 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE230663 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |