Omics · study · 2026
8-week-old mouse mandible scRNA-seq reveals bone marrow microenvironment
Listed in NCBI GEO
We explored the cellular composition of the bone marrow stroma by scRNA-seq profiling from mice mandible of 8-week-old.
Description
After viability assessment, 3,568 high-quality cells were captured using the 10x Genomics Chromium Single Cell platform, with rigorous quality control thresholds: >500 UMIs/cell, < 25% mitochondrial reads.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE316nnn/GSE316924 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316924 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1405547 ncbi.nlm.nih.gov/bioproject/PRJNA1405547 ↗
project · from NCBI GEO
- PubMed 41866504 pubmed.ncbi.nlm.nih.gov/41866504 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Single-cell RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE316924 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |