Table · dataset · 2026
Chinese
Listed in HKU DataHub and figshare and Loughborough Research Repository and UP Research Data Repository — shown once because both records carry DOI 10.6084/m9.figshare.34013481.v1
Description
<p dir="ltr">1.667XianSample.PASS.missing0.9.maf0.01.Biallelic.OnlyGT.WildOutgroup.vcf.gz中包含667新增样本+5份公共数据+3份野生稻外群，包含675个样本的SNP/INDEL数据集，主要用于选择性清除分析、LD分析(不要被missing0.9误导，其实就是missing <=0.1)；</p><p dir="ltr"><br>2.667XianSample.PASS.missing0.9.maf0.01.Biallelic.OnlyGT.WildOutgroup.OnlySNP.LDfilter.vcf.gz则是667XianSample.PASS.missing0.9.maf0.01.Biallelic.OnlyGT.WildOutgroup.vcf.gz数据集经过LD剪枝之后的结果，主要用于群体结构分析(不要被missing0.9误导，其实就是missing <=0.1)；</p><p><br></p><p dir="ltr">3.672XianSample.50Wild.PASS.missing0.2.maf0.01.Biallelic.OnlyGT.vcf.gz中包含667新增样本+5份公共数据+50份野生稻外群，包含722个样本的SNP/INDEL数据集，主要用于ggComp.plus.sh分析；<br><br>4.667XianSample.PASS.missing0.2.maf0.01.Biallelic.OnlyGT.beagle.OnlyPhaseKeepMissing.vcf.gz和667XianSample.PASS.missing0.2.maf0.01.Biallelic.OnlyGT.beagle.vcf.gz，则是包含667新增样本+5份公共数据+3份野生稻外群的数据集，使用beagle定相填充以及仅定相不填充的结果，主要用于HaploBlocker和IBD分析；<br></p><p dir="ltr">5.667XianSample.28Wild.PASS.missing0.2.maf0.01.Biallelic.OnlyGT.OnlySNP.vcf.gz则是包含667新增样本+5份公共数据+28份野生稻外群的数据集，主要用于基因流分析；</p><p dir="ltr">6.667XianSample_k31_sketch_Total0.1.vcf.gz则是包含667新增样本+5份公共数据+3份野生稻外群，并且随机抽样0.%后的Kmer数据集，主要用于群体结构分析。</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.34013481.v1 ↗
DOI / persistent id · from datahub hku hk
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from datahub hku hk
Topics
- From keywords
- Astronomy & Astrophysics · Chemistry · Chemistry · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Engineering · Genomics · Genomics · Genomics · Genomics · Genomics and transcriptomics · Genomics and transcriptomics · Genomics and transcriptomics · Genomics and transcriptomics · Humanities · Humanities · Humanities · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Materials Science · Mathematics & Statistics · Mathematics & Statistics · Mathematics & Statistics · Mathematics & Statistics · Medicine & Health · Medicine & Health · Ocean & Atmospheric Science · Psychology & Behavioral Science · Social Science · Social Science · Social Science · Statistical and quantitative genetics · Statistical and quantitative genetics · Statistical and quantitative genetics · Statistical and quantitative genetics
Provenance · 4 source records, 50 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| HKU DataHub | oai:figshare.com:article/34013481 | 6 d ago | JSON v1 |
| figshare | oai:figshare.com:article/34013481 | 5 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/34013481 | 5 d ago | JSON v1 |
| UP Research Data Repository | oai:figshare.com:article/34013481 | 4 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].anzsrc:field:310204 | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310204 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310204 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310204 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310207 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Statistical and quantitative genetics'] |
| concepts[field].anzsrc:field:310207 | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['Statistical and quantitative genetics'] |
| concepts[field].anzsrc:field:310207 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Statistical and quantitative genetics'] |
| concepts[field].anzsrc:field:310207 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Statistical and quantitative genetics'] |
| concepts[field].anzsrc:field:310509 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Genomics'] |
| concepts[field].anzsrc:field:310509 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Genomics'] |
| concepts[field].anzsrc:field:310509 | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['Genomics'] |
| concepts[field].anzsrc:field:310509 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Genomics'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| description | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | /metadata/dc/description |
| license | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | /metadata/dc/rights |
| publication_date | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| title | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | /metadata/dc/title |