Excel · study · 2026
Identification of a novel deeply quiescent neural stem cell population in the subventricular zone
Listed in NCBI GEO
This study shows that a novel genetic tool, the Penk-CreAi9 line, expressing Cre recombinase under the Proenkephalin promoter and combined with the Ai9-tdTomato line, labels a distinct group of stem cells in the SVZ together with previously identified subgroups of B-cells and neuroblasts.
Description
Single-cell RNA sequencing (scRNA-seq) demonstrates that these cells represent a previously unappreciated population of qNSCs with a unique transcriptional profile and a less differentiated state than the canonically accepted GLAST+ NSCs.
In particular, the analysis further reveals expression of 5-hydroxytryptamine receptor 2C (5-HT2C receptor) and prolactin receptor (PRLR), which were previously functionally correlated with qNSCs but not captured or profiled in RNAseq experiments. This study also identifies novel markers, including Kcnj13, a gene that encodes the potassium channel KiR7.1, that define the identity of these cells.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE311nnn/GSE311603 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311603 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1369994 ncbi.nlm.nih.gov/bioproject/PRJNA1369994 ↗
project · from NCBI GEO
- PubMed 42443150 pubmed.ncbi.nlm.nih.gov/42443150 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Genetics 69% · RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE311603 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3105 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |