Omics · study · 2026
Hepatocyte intrinsic ER stress and persistent NRF2 activation initiate primary sclerosing cholangitis, providing new therapeutic insights
Listed in NCBI GEO
Primary sclerosing cholangitis (PSC) is a progressive cholestatic liver disease with poorly defined pathogenesis.
Description
To investigate the mechanisms by which hepatocyte-intrinsic stress responses contribute to PSC development, we performed single-nucleus RNA sequencing (snRNA-seq) on liver tissues from mouse models with endoplasmic reticulum (ER) stress and persistent NRF2 activation, along with control mice. These mice developed PSC-like pathology, including cholestasis, bile duct proliferation, inflammation, and fibrosis.
Transcriptomic analyses revealed activation of ER stress, NRF2, EGFR signaling pathway, and JNK signaling pathways, along with suppression of the FXR–BSEP axis and disrupted bile acid metabolism. Notably, hepatocyte-intrinsic stress responses were associated with disease initiation, whereas NRF2 activation in cholangiocytes contributed to biliary proliferation and disease progression. Cross-species integration with human PSC datasets confirmed similar transcriptional alterations.
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These findings demonstrate that ER stress and NRF2 activation cooperate to drive PSC initiation and progression.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE328nnn/GSE328539 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE328539 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1455611 ncbi.nlm.nih.gov/bioproject/PRJNA1455611 ↗
project · from NCBI GEO
- PubMed 42579490 pubmed.ncbi.nlm.nih.gov/42579490 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 65%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE328539 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |