Omics · dataset · 2026
VIPerturb-seq Stage 7 custodian export: perturbation mean expression profiles
Listed in figshare
<p dir="ltr">Custodian export for Stage 7 of VIPerturb-seq (genome-wide).</p><p><br></p><p dir="ltr">This dataset contains the mean expression profiles of 20 cells for each of 6168 perturbations that had at least 20 cells, computed from a genome-wide perturb-seq Seurat object.
Description
It also contains one control profile (pseudo-control branch, 2000 cells, since fewer than 2000 non-targeting cells were available).</p><p><br></p><p dir="ltr">The 20-cell draw was fixed by rule before any expression value was read.
No full-depth perturbation profiles, no per-cell data and no held-out cells are included.</p><p><br></p><p dir="ltr">Files:</p><p dir="ltr">- stage7_input_means.f32: raw little-endian float32, targets x genes, row major (6168 x 19068), 470,445,696 bytes</p><p dir="ltr">- stage7_input_meta.json: gene names, target names, cell counts, scalars</p><p dir="ltr">- run.log: complete terminal output from the export</p><p><br></p><p dir="ltr">md5:</p><p dir="ltr">- stage7_input_means.f32: 7f47812563bac1bc32e248aa654e244e</p><p dir="ltr">- stage7_input_meta.json: 42f78a022353a88bed8ad6c1e24371cc</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.33719593.v1 ↗
DOI / persistent id · from figshare com
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from figshare com
Topics
Provenance · 1 source records, 18 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| figshare | oai:figshare.com:article/33719593 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].anzsrc:field:310509 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Genomics'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[modality].local:modality:single-cell-rna-seq | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['single-cell RNA sequencing'] |
| description | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/description |
| license | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/rights |
| publication_date | source · figshare com | connector:figshare_com@1.0.0 | |
| title | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/title |