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Omics · study · 2026

Generation of alveolar organoids from human induced pluripotent stem cells using a stirred-tank bioreactor

Listed in NCBI GEO

Organoids are increasingly establishing themselves as a valuable, patient-centered alternative to preclinical animal models as they are highly complex models for organ development studies and, in particular, robust disease models for mechanistic investigations and therapy response assessments.

Description

We previously established a very simple and practical protocol for producing iPSC-LuOrgs from pre-differentiated embryoid bodies without the need of a gel-like extracellular matrix using a stirred bioreactor system.

Here, we investigated now an adapted protocol for the generation of iPSC-LuOrgs directly from iPSCs in stirred suspension and performed a comprehensive cellular and molecular characterization, including single-cell RNA sequencing, of the resulting LuOrgs differentiated in a bioreactor. Generated lung structures appeared to be less differentiated and were predominately of alveolar nature. Fibroblasts and bronchial epithelial cells were inefficiently generated.

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Therefore, pre-differentiation of iPSCs, e.g., in embryoid bodies seems to be a necessary prerequisite for the efficient generation of iPSC-LuOrgs, which then exhibit alveolar and bronchial cell types and structures supported by mesenchymal cells.

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Life Sciences
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Disease 75% · RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 11 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE33736514 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[disease].local:disease:diseaseenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:sequencingenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:single-cell-rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[organism].NCBITaxon:9606source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title