Omics · study · 2026
Generation of alveolar organoids from human induced pluripotent stem cells using a stirred-tank bioreactor
Listed in NCBI GEO
Organoids are increasingly establishing themselves as a valuable, patient-centered alternative to preclinical animal models as they are highly complex models for organ development studies and, in particular, robust disease models for mechanistic investigations and therapy response assessments.
Description
We previously established a very simple and practical protocol for producing iPSC-LuOrgs from pre-differentiated embryoid bodies without the need of a gel-like extracellular matrix using a stirred bioreactor system.
Here, we investigated now an adapted protocol for the generation of iPSC-LuOrgs directly from iPSCs in stirred suspension and performed a comprehensive cellular and molecular characterization, including single-cell RNA sequencing, of the resulting LuOrgs differentiated in a bioreactor. Generated lung structures appeared to be less differentiated and were predominately of alveolar nature. Fibroblasts and bronchial epithelial cells were inefficiently generated.
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Therefore, pre-differentiation of iPSCs, e.g., in embryoid bodies seems to be a necessary prerequisite for the efficient generation of iPSC-LuOrgs, which then exhibit alveolar and bronchial cell types and structures supported by mesenchymal cells.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE337nnn/GSE337365 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE337365 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1484965 ncbi.nlm.nih.gov/bioproject/PRJNA1484965 ↗
project · from NCBI GEO
- PubMed 42620978 pubmed.ncbi.nlm.nih.gov/42620978 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE337365 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |