Omics · study · 2026
Selective Translation of ZNF281 as Part of the Integrated Stress Response System has Therapeutic Relevance for Cardio-Oncology
Listed in NCBI GEO
This study aims to investigate the role of ZNF281 in cardiomyocyte function and tumor biology by integrating RNA-seq and ChIP-seq datasets.
Description
Using a C57BL/6 mouse model, we isolated cardiomyocytes from ZNF281 overexpression (OE) and knockdown (Kd) mice, along with their respective controls, to analyze transcriptomic changes and ZNF281 genome-wide binding patterns. Additionally, we included tumor samples from nude mice, specifically A549 ZNF281 knockout (KO) tumors and parental A549 tumors, to explore the differential regulation and binding patterns of ZNF281 between cardiac tissue and tumors.
RNA-seq was performed to identify differentially expressed genes regulated by ZNF281 in both contexts, while ChIP-seq was conducted to map ZNF281 DNA-binding sites and its role in transcriptional regulation. This study will provide insights into the context-dependent functions of ZNF281 in the heart and tumors, enhancing our understanding of its role in cardiac biology and cancer progression.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE325nnn/GSE325898 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325898 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1227919 ncbi.nlm.nih.gov/bioproject/PRJNA1227919 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75% · Heart 75% · RNA sequencing 65%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE325898 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[anatomy].local:anatomy:heart | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |