Omics · study · 2026
Niche-driven plasticity of bipotent basal epithelial cells in the human ocular surface [scRNA-seq]
Listed in NCBI GEO
The human ocular surface comprises corneal and conjunctival epithelia separated by the limbus, a specialized niche that maintains corneal transparency through limbal stem and progenitor cells (LSCs).
Description
LSC loss or dysfunction causes limbal stem cell deficiency (LSCD), characterized by conjunctivalization, neovascularization, chronic inflammation, and corneal scarring, leading to severe visual impairmen. LSCD may result from injury, autoimmune disease or genetic disorders, yet current treatmens, including limbal transplantation and ex vivo–expanded epithelial grafts, are limited by donor availability and variable long term efficacy.
Until now, the limbus has been regarded as a static boundary enforcing lineage segregation between corneal and conjunctival epithelia. Here, we show that the human limbus instead harbors bipotent basal epithelial progenitors that are transcriptionally more similar to conjunctival than corneal basal cells and whose fate is directed by local niche cues. Keratinocyte growth factor (KGF) signaling through FGFR2 promotes corneal epithelial differentiation, whereas epidermal growth factor (EGF) maintains conjunctival identity.
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This niche dependent epithelial plasticity provides a mechanistic explanation for conjunctivalization in LSCD and identifies KGF–FGFR2 signaling as a potential therapeutic target for corneal epithelium restoration. Together, these findings redefine the limbus as a dynamic progenitor niche with broad implications for stem cell biology and regenerative medicine.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE319nnn/GSE319836 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319836 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1425295 ncbi.nlm.nih.gov/bioproject/PRJNA1425295 ↗
project · from NCBI GEO
- PubMed 42396502 pubmed.ncbi.nlm.nih.gov/42396502 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens · Other
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · Single-cell RNA sequencing 65%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE319836 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |