Omics · study · 2026
CCL Signaling Drives T Cell–Macrophage Crosstalk in the Mouse Colon During Chronic Trypanosoma cruzi Infection
Listed in NCBI GEO
Chagas disease, caused by the protozoan Trypanosoma cruzi, is a chronic infection characterized by low levels of parasite persistence in tissues such as the heart, gastrointestinal tract, and skeletal muscle.
Description
The mechanisms underlying digestive Chagas disease (DCD), particularly within the colon, remain incompletely defined. To characterize the immune landscape during chronic infection, we used a murine model of DCD and performed single-cell RNA sequencing of colonic lamina propria cells.
Immune profiling revealed infiltration of T cells, B cells, and macrophages, with T cells representing the predominant immune population in the chronically infected colon. Computational cell–cell communication analysis predicted activation of chemokine signaling pathways, including the CCL5–CCR5 axis, mediating interactions between CD8+ T cells and macrophages. Processed single-cell gene expression matrices and associated metadata are provided in this submission
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE319nnn/GSE319934 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319934 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1416998 ncbi.nlm.nih.gov/bioproject/PRJNA1416998 ↗
project · from NCBI GEO
- PubMed 42436983 pubmed.ncbi.nlm.nih.gov/42436983 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · Heart 75% · RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE319934 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[anatomy].local:anatomy:heart | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |