Omics · study · 2026
DCAF7 regulates hematopoietic stem cell function and differentiation through polycomb repressive complex 1 (PRC1) modulation
Listed in NCBI GEO
DDB1 and CUL4 Associated Factors (DCAFs) are a family of approximately 100 proteins that associate with cullin‐RING E3 ubiquitin ligase complexes to regulate cellular processes.
Description
DCAF7 is considered a substrate receptor for E3 ligases and is one of the few DCAFs expressed in hematopoietic stem cells (HSCs). Hematopoietic cell lines exhibit a high dependency on DCAF7, unlike non-hematopoietic cell lines .
In addition, mutations in DCAF7 were first reported in patients with myeloid leukemia of Down syndrome and more have been identified in other hematological cancers. To investigate the role of DCAF7 in hematopoiesis, we generated a novel conditional knockout mouse model. Our results indicate that the absence of DCAF7 led to accumulation of differentiating progenitors in the bone marrow.
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Following transplantation, Dcaf7-deficient cells were outcompeted by wild-type cells and showed impaired self-renewal capacity. Using single-cell RNA sequencing and single-cell time-lapse microscopy, we observed that the loss of Dcaf7 accelerates the differentiation of HSCs into the myeloid lineage. At the molecular level, DCAF7 interacts with components of the E3 ligase-containing epigenetic complex polycomb repressive complex 1 (PRC1), which is involved in gene silencing, and promotes the assembly of large macromolecular PRC1 complexes.
Chromatin profiling of HSCs and progenitors revealed that the loss of DCAF7 leads to increased localization of RING1B, the core component of PRC1, at transcriptionally active genomic loci. This increased binding was observed at genes involved in myeloid differentiation and was associated with increased mRNA expression in HSCs. Together, these data reveal that DCAF7 contributes to control of HSC differentiation through the PRC1 complex.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE279nnn/GSE279267 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE279267 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1171768 ncbi.nlm.nih.gov/bioproject/PRJNA1171768 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Microscopy 75% · RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Related
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE279267 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:microscopy | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |