Data · dataset · 2019
Aberrant epigenetic silencing of amplified genomic regions in ovarian cancer
Listed in Teesside University Research Data Repository
Description
DCPM_analysis_BonitoEtAl2019.R: R script for data import and analysis SupplementaryAnalysis_BonitoEtAl2019.R: R script for analysis to produce supplementary figures and tables clinical_slide_all_ov.txt: TCGA cellularity data full450k.rds: Illumina HumanMethylation450k annotation ICGC_OV-AU_CNVbyCpG.rds: ICGC copy-number data matrix ICGC_OV-AU_GX.rds: ICGC gene expression data matrix ICGC_OV-AU_Meth.rds: ICGC DNA methylation data matrix Illumina27k_annotation2.rds: Illumina HumanMethylation27k detailed annotation Illumina27k_annotation.rds: Illumina HumanMethylation27k basic annotation sample.OV-AU.tsv: ICGC cellularity data (and sample ID table) TCGA_OV_CBS.rds: TCGA copy-number data matrix TCGA_OV_GX.rds: TCGA gene expression data matrix TCGA_OV_meth.rds: TCGA DNA methylation data matrix
Links
Where it is published
- DOI doi.org/10.17632/623s8b9vb4.1 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Epigenetics · Genomics · Life Sciences · Medicine & Health
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/623s8b9vb4.1 | 15 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:field:310504 | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['Epigenetics'] |
| concepts[field].anzsrc:field:310509 | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['Genomics'] |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |