Omics · study · 2026
Dendritic cell dysfunction independently predicts poor prognosis in acute lymphoblastic leukemia
Listed in NCBI GEO
We have used scRNA-seq to evaluate the production and maturation of DC1-6 subsets to be disrupted in children and adults with ALL.
Description
While conventional DC1 and DC2 are reduced, cells within all DC subsets in patients have impaired antigen presentation and produce less cytokines needed for initiating T-cell surveillance than their normal counterparts in healthy people. ALL DCs are unable to induce T-cell proliferation.
Overexpression of MYC in leukemia cells, in part by abrogating NK surveillance, disrupts DC homeostasis and reduces the ability of DCs to induce T-cell immunity. Importantly, immature, dysfunctional DCs with impaired antigen presentation independently predict poor prognosis in patients with high-risk ALL. Thus, phenotyping DC subsets in bone marrow or peripheral blood at ALL diagnosis or relapse could inform the course of treatment.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE304nnn/GSE304657 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304657 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1291746 ncbi.nlm.nih.gov/bioproject/PRJNA1291746 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Single-cell RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE304657 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |