Omics · study · 2026
Rifaximin Alleviates MASH by Suppressing Deoxycholic Acid-Triggered Macrophage-Hepatocyte Dialogue
Listed in NCBI GEO
Metabolic dysfunction-associated steatohepatitis (MASH) is characterized by a complex interplay between gut microbiota-derived metabolites and hepatic immune infiltration.
Description
This study investigates the therapeutic mechanism of rifaximin, an oral non systemic antibiotic, in the context of MASH progression and its modulation by bile acid signaling. Our preliminary data indicated that while rifaximin significantly ameliorates MASH features, deoxycholic acid (DCA), a secondary bile acid and potent S1PR2 agonist reverses these beneficial effects.
To systematically dissect the specific cellular populations involved, we performed single-nucleus RNA sequencing (snRNA-seq) and bulk RNA-seq on liver tissues from mice under various conditions, including HFF-induced MASH, rifaximin treatment, and rifaximin treatment supplemented with DCA reconstitution. The snRNA-seq analysis primarily focused on the hepatic immune landscape, specifically the dynamics of monocyte-derived macrophages (MoMFs).
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE317nnn/GSE317518 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE317518 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1406342 ncbi.nlm.nih.gov/bioproject/PRJNA1406342 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 65%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE317518 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |