Omics · study · 2026
Single-nucleus RNA sequencing of brain tissue from HIV-infected and uninfected donors.
Listed in NCBI GEO
This project investigates the molecular and cellular mechanisms that enable HIV persistence within the human brain across distinct infection states.
Description
Postmortem brain tissues from uninfected controls, viremic individuals, and antiretroviral therapy (ART) suppressed people with HIV were dissociated into single-nucleus suspensions and profiled by high-throughput RNA sequencing. The resulting dataset supports the identification of transcriptional reprogramming, immune modulation, and latent viral reservoir signatures associated with HIV-associated neurocognitive disorders (HAND).
Integration of single-nucleus RNA-seq data across these clinical conditions provides a comprehensive atlas of HIV host interactions in the central nervous system.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE331nnn/GSE331008 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE331008 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1357854 ncbi.nlm.nih.gov/bioproject/PRJNA1357854 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 65%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE331008 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |