Omics · study · 2026
Barcoded lineage tracing of diverse cell types within the developing mouse embryonic gut.
Listed in NCBI GEO
The gut is a heterogeneous organ consisting of derivatives of all three germ layers.
Description
To determine the lineage relationship between different gut cells, we labelled embryos with barcoded lentivirus at embryonic day 7.5 (E7.5), collected different regions of the gut at E16.5 and performed single cell RNA-sequencing(scRNA-seq). We analysed different types of mesenchymal, endothelial, epithelial and immune cells as well as enteric nervous system cells.
The data allows us to make inferences about clonal relationships and regional commitment at the time point of injection.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE325nnn/GSE325733 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325733 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1441526 ncbi.nlm.nih.gov/bioproject/PRJNA1441526 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Single-cell RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE325733 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |