Omics · study · 2026
Intestinal epithelial and immune cell responses to Vibrio cholerae and IL22 therapy at single-cell resolution
Listed in NCBI GEO
Vibrio cholerae colonizes the small intestine and causes acute severe diarrhea.
Description
Knowledge of intestinal cell responses and innate immune defenses to infection with the cholera pathogen is limited. We defined the epithelial and lamina propria immune cell transcriptional responses to experimental cholera using single-cell RNA sequencing using the infant mouse model of V. cholerae infection.
Infection increased the abundance of an enterocyte subtype that highly expressed defense-associated functions, as well as the production of Il22 from ILC3 cells. An IL22 Fc-fusion protein markedly limited V. cholerae intestinal colonization and protected mice from diarrhea and death. IL22 treatment induced expression of vibriocidal Reg3b and elevated the abundance of secretory lineage cells that produce Muc2, impairing V. cholerae association with epithelial cells.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE288nnn/GSE288380 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288380 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1214724 ncbi.nlm.nih.gov/bioproject/PRJNA1214724 ↗
project · from NCBI GEO
- PubMed 42236988 pubmed.ncbi.nlm.nih.gov/42236988 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE288380 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |