Omics · study · 2026
RNA binding proteins Pcbp1 and Pcbp2 are indispensable for B cell development [scRNA-seq]
Listed in NCBI GEO
B-cell development in the bone marrow is a tightly regulated process requiring precise control of gene expression at both transcriptional and post-transcriptional levels.
Description
Here, we identify the RNA-binding proteins Pcbp1 and Pcbp2 as essential, redundant regulators of early B lymphopoiesis. While a single deficiency of either Pcbp1 or Pcbp2 results in only a partial blockade at the pro-B to pre-B transition, their combined deletion causes a near-complete arrest.
Using single-cell RNA sequencing, we identify the developmental bottleneck to the pro-B VDJ A stage—characterized by active D-JH rearrangement—with a failure to generate Lambda pre-B or immature B cells. Mechanistically, Pcbp1/2 deficiency triggers multifaceted cell-intrinsic defects: loss of Ebf1-driven lineage identity, mitochondrial dysfunction, and accumulation of proteotoxic stress. These defects converge to block early progenitor survival and expansion, ultimately preventing B cells from progressing beyond the pre-B stage.
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Our findings establish Pcbp1 and Pcbp2 as critical post-transcriptional regulators that couple metabolic fitness with lineage integrity, uncovering an RBP-dependent checkpoint essential for B cell lymphopoiesis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE324nnn/GSE324241 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE324241 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1434286 ncbi.nlm.nih.gov/bioproject/PRJNA1434286 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE324241 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |