Omics · dataset · 2026
Single-cell transcriptomic profiling of zebrafish pectoral fins during androgen-induced breeding tubercle formation
Listed in ZivaHub and HKU DataHub and figshare and Loughborough Research Repository and UP Research Data Repository — shown once because both records carry DOI 10.6084/m9.figshare.34022991.v1
<p dir="ltr">This project investigates the cellular composition and transcriptional changes associated with androgen-induced breeding tubercle formation in zebrafish (Danio rerio) pectoral fins.
Description
Six-month-old female zebrafish were exposed to 0.5 μM 11-ketotestosterone (11-KT) or DMSO vehicle control for 14 days. Pectoral fin tissues were collected and dissociated into single-cell suspensions for single-cell RNA sequencing using the 10x Genomics platform.
The dataset enables characterization of pectoral fin cell populations and comparison of cell-type-specific transcriptional responses between treatment and control groups, with a focus on epithelial differentiation, keratinization, and signaling pathways associated with breeding tubercle formation.</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.34022991.v1 ↗
DOI / persistent id · from zivahub uct ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from zivahub uct ac za
Topics
- From keywords
- Astronomy & Astrophysics · Chemistry · Chemistry · Computer Science & AI · Computer Science & AI · Danio rerio · Danio rerio · Danio rerio · Danio rerio · Danio rerio · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Engineering · Genomics and transcriptomics · Genomics and transcriptomics · Genomics and transcriptomics · Genomics and transcriptomics · Genomics and transcriptomics · Humanities · Humanities · Humanities · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Life Sciences · Materials Science · Mathematics & Statistics · Medicine & Health · Medicine & Health · Ocean & Atmospheric Science · Psychology & Behavioral Science · Single-cell RNA sequencing · Single-cell RNA sequencing · Single-cell RNA sequencing · Single-cell RNA sequencing · Single-cell RNA sequencing · Social Science · Social Science · Social Science
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 5 source records, 54 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ZivaHub | oai:figshare.com:article/34022991 | 6 d ago | JSON v1 |
| HKU DataHub | oai:figshare.com:article/34022991 | 6 d ago | JSON v1 |
| figshare | oai:figshare.com:article/34022991 | 5 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/34022991 | 5 d ago | JSON v1 |
| UP Research Data Repository | oai:figshare.com:article/34022991 | 5 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].anzsrc:field:310204 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310204 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310204 | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310204 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310204 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata up ac za | connector:researchdata_up_ac_za@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · zivahub uct ac za | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · zivahub uct ac za | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Single-cell RNA sequencing'] |
| concepts[modality].local:modality:single-cell-rna-seq | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Single-cell RNA sequencing'] |
| concepts[modality].local:modality:single-cell-rna-seq | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Single-cell RNA sequencing'] |
| concepts[modality].local:modality:single-cell-rna-seq | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Single-cell RNA sequencing'] |
| concepts[modality].local:modality:single-cell-rna-seq | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['Single-cell RNA sequencing'] |
| concepts[organism].NCBITaxon:7955 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Zebrafish'] |
| concepts[organism].NCBITaxon:7955 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Zebrafish'] |
| concepts[organism].NCBITaxon:7955 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Zebrafish'] |
| concepts[organism].NCBITaxon:7955 | mapping · researchdata up ac za | vocabulary-mapper@1.0.0 | keywords['Zebrafish'] |
| concepts[organism].NCBITaxon:7955 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Zebrafish'] |
| description | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/description |
| license | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/rights |
| publication_date | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| title | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/title |